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seattle hub for synthetic biology

write team

The Write Team takes barcodes from the Sense Team and creates a permanent record (DNA Tape) in the cellular DNA. These records are stored in sequential order, enabling team members to understand the relative timing of different cellular events.

goals and approach

The Write Team develops CRISPR-based tools that record cellular events into the DNA of the cell. Such records can include information on cellular lineages, internal occurrences and decisions, external signals or stressors, phenotypic changes, and, in theory, any biological signal. Importantly, this information is recorded sequentially. This creates a relative timeline of each event as it happens, acting like a cellular smart watch that can later report back on the health, actions, and experiences of the cell.

ll’s genomic DNA. The first segment of Tape is nicked using a CRISPR-Cas9 enzyme. A short DNA sequence, known as a molecular barcode, is then inserted into the cut site. The barcodes function similar to the Morse Code, where each unique barcode translates to a specific cellular event. Thus, the insertion of the barcode into the DNA creates a record of a specific event.

Once the first segment of Tape has a barcode inserted, the second segment opens for modification. This enables an orderly, sequential insertion of barcodes. Later, scientists can read the barcoded record in the Tape to find out what events took place in the cell and the order in which they occurred.

DNA Typewriter technology will reveal the events of cellular biology with unprecedented resolution. Prior approaches mainly relied on collecting discontinuous information at multiple time points to infer the history of cellular events. DNA Typewriter is beginning to enable scientists to obtain continuous records of past cellular events by decoding information written in the Tapes, just like information collected on a smart watch.

‍

Healthcare worker in white coat and blue latex gloves examining sample in laboratory setting
Dr. Emily Cliff (Write Team) presents a tube containing DNA TAPE – a core component of the DNA Typewriter System
Scientist using microscopy equipment analyzing samples on computer display
Shurthi Vijay Kumar (Write Team) uses a microscope to check if the N2A cells from this sample have fluorescence.

research details/

create a DNA Typewriter Mouse

  • The first major aim of the Seattle Hub for Synthetic Biology is to create a mouse capable of recording the lineage of its own cells using DNA Typewriter technology
  • The Write Team is currently working to develop DNA Tape and DNA editing enzymes that are compatible with this application and capable of recording an extensive cell lineage: from a single cell zygote to a fully grown mouse.

refining DNA Typewriter technology

  • The Write Team is working toward increasing the editing efficiency, speed, and accuracy of the DNA Typewriter system

endless TAPE

  • The Write Team aims to expand the recording capacity of DNA Tape and envisions eventually recording without any limit in the recording length

write team

Grace Travis
Shuhua Luo
Emily Cliff
Scientist I
Molly Gasperini
Associate Director, Genome Engineering
Yasuhiro Kyono
Scientist III - Molecular Biology / Genome Engineering
Hannah Starkey
Research Associate I
Shruthi Vijay Kumar
Senior Research Associate
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