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Tim Jarsky

Associate Director, Electrophysiology

teams /
Allenite

Tim Jarsky joined the Allen Institute for Brain Science in 2013 as part of the Mouse Cell Types research program. Tim is part of a team of scientists working to map and characterize microcircuits in the mouse visual cortex. Prior to joining the institute, he investigated the contribution of synaptic processing to visual computations in the retina. As a doctoral student he studied the role of intrinsic membrane properties in hippocampal information processing. His early research experiences include respiratory physiology, circadian rhythms, endocrine physiology, and avian flight physiology. Tim obtained his PhD in neuroscience from Northwestern University, MS in zoology and BS in biology from the University of Toronto.

research focus

The Allen Institute for Brain Science is in the early stages of a large-scale, multi-year, experimental and theoretical effort to study coding in the cerebral cortex. A critical component of this effort is to systematically characterize neuronal cell types in the cortex and its afferent and efferent structures at molecular, anatomical, and physiological levels. One goal for the physiological study of neuronal cell types is to investigate synaptic connections formed by cell types, with in vitro preparations, using electrical and optical activation combined with multiple simultaneous neuronal recordings. Using this approach, we will address the following questions: Do different subpopulations of cells, defined by genetic markers, form discrete microcircuits? How do connectivity and the synaptic properties of the circuit influence circuit computations? Do the microcircuit properties correlate with functional properties?

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publication / 2025
The synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex
Nature Neuroscience
publication / 2025
Integrating multimodal data to understand cortical circuit architecture and function
Nature Neuroscience
publication / 2024
Integrated multimodal cell atlas of Alzheimer's disease
Nature Neuroscience

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news 
Projects launch to map brain connections in mouse and macaque
NIH BRAIN Initiative-funded research will lay the groundwork to map entire brains in incredible detail
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How do our neurons connect? New study probes the details of human and mouse synapses
‘Multipatch’ technique catalogs more than 1700 connections between neurons in publicly released dataset

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