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Ed Lein

Executive Vice President and Director of Brain Health Accelerator

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Leadership
Allenite

Ed Lein is a Vice President and Executive Director for a new initiative at Allen Institute, and an Affiliate Professor in the Departments of Neurological Surgery and Laboratory Medicine and Pathology (DLMP) at the University of Washington. He received a B.S. in biochemistry from Purdue University and a Ph.D. in neurobiology from UC Berkeley, and performed postdoctoral work at the Salk Institute for Biological Studies.

Ed joined the Allen Institute in 2004 and has provided scientific leadership for the creation of large-scale anatomical, cellular and gene expression atlases of the adult and developing mammalian brain as catalytic community resources, including the inaugural Allen Mouse Brain Atlas and a range of developmental and adult human and non-human primate brain atlases. Particular current research interests involve the use of single cell genomics as a core phenotype to understand brain cellular organization, mammalian conservation and human specificity, define cellular vulnerability in disease, and identify regulatory elements that allow cell type-specific targeting and manipulation.

He leads the Human Cell Types Department, which aims to create comprehensive cell atlases of the human and non-human primate brain, understand what is disrupted in Alzheimer’s disease, and create tools for precision genetic targeting of brain cell types as transformative tools for basic neuroscience and gene therapy. He is also a member of the BRAIN Initiative Cell Atlas Network (BICAN), a member of the Organizing Committee of the Human Cell Atlas (HCA), and a CIFAR fellow.

Ed’s areas of expertise include developmental neurobiology, structural and cellular neuroanatomy, transcriptomics and epigenomics, comparative neurobiology, and Alzheimer’s disease. His research program work encompasses brain cell atlasing, comparative neurobiology, Alzheimer’s disease, and gene therapy.

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featured publications

publication / 2025
Accelerating biomedical discoveries in brain health through transformative neuropathology of aging and neurodegeneration
Neuron
publication / 2025
Integrating multimodal data to understand cortical circuit architecture and function
Nature Neuroscience
publication / 2024
Mapping human tissues with highly multiplexed RNA in situ hybridization
Nature Communications

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featured stories

news 
Mapping the brain to improve lives
A collaborative effort between UW and the Allen Institute is creating a first-of-its-kind brain atlas, paving the way for breakthroughs in brain...
news 
New study traces Alzheimer's 'pathology clock' at unprecedented cellular resolution
Scientists map Alzheimer’s advance at fine cellular level and identify some of the first neurons lost to disease, providing potential targets for...
news 
What makes us human? Detailed cellular maps of the entire human brain reveal clues
You have 3,000+ different kinds of brain cells, and more insights from the largest human brain cell atlases created to date

featured media

media / The Transmitter
The Transmitter: Recruitment issues jeopardize plan for human brain atlas
A lack of new brain donors may stop Brain Atlas research from meeting its goals.
media / NPR
NPR: Timeline shows what happens to different brain cells as Alzheimer’s progresses
An analysis of brains at various stages of Alzheimer's found that neurons called inhibitory neurons are the first to be affected by the disease.
media / Newsweek
Newsweek: Alzheimer's Hidden 'Early' Brain Damage Phase Revealed by Neuroscientists
Alzheimer's disease damages the brain before any symptoms begin to appear, new research suggests. This is part of a new two-step model of Alzheimer's progression, which features an early "silent" stage of brain damage.
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